TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= query SelS_C.intestinalis.fa
         (204 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic s...    38   0.004
gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic s...    36   0.022
gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic s...    34   0.064
gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s...    34   0.064
gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic s...    34   0.084
gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s...    33   0.11 
gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic s...    33   0.14 
gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s...    33   0.14 
gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s...    32   0.32 
gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s...    32   0.32 
gb|GL291002.1| Polysphondylium pallidum PN500 unplaced genomic s...    32   0.42 
gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic s...    31   0.71 
gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic s...    30   0.93 
gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s...    30   0.93 
gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s...    30   1.2  
gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic s...    30   1.6  
gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   3.5  
gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   4.6  
gb|GL291024.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   6.0  
gb|GL291008.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   6.0  
gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   6.0  
gb|GL291017.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   7.9  
gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   7.9  
gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   7.9  

>gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig12,
              whole genome shotgun sequence
          Length = 1458135

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
 Frame = +1

Query: 74     RRKTYYDDTENMTPEQVEARSVAMER-ARKKLQDRHDAAAREHEERLREQEEQKRMQKIN 132
              +R+    + E    E+ E      ER ARKK +++ +   RE EER RE+ E++R  +  
Sbjct: 761440 KREREQKEKEQKEKEEREREEREREREARKKEREQKEKEQREKEEREREEREKEREARRR 761619

Query: 133    DHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPL 181
              + +  +  +   +  ++ D++ +  +  +    R KE +     +   L
Sbjct: 761620 ERELKEKEQRDKEQKEREDREREREEVNRQREARRKEREDKEKEELEKL 761766



 Score = 33.9 bits (76), Expect = 0.084
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = -3

Query: 85     MTPEQVEARSVAMERARKKLQDRHDAAAREHEE---RLREQEEQKRMQKINDHDALKAGK 141
              M   + E +    +R +++ ++R      E EE   + REQEE+ + Q++ND    +  +
Sbjct: 631351 MKKREEEEKEAEAKRQKEREEERQRKIKEEEEEQQRKKREQEEELKKQQLNDERLKREEQ 631172

Query: 142    TQSKTSKKLDQKPDPNQATQSHIKRNKESK 171
                 +  KK D+  +  Q  Q  +K  ++ +
Sbjct: 631171 KIVEEMKKFDEDRE-RQQQQDKVKDEEDQR 631085



 Score = 30.4 bits (67), Expect = 0.93
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
 Frame = +3

Query: 74      RRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHD-----AAAREHEERLREQEEQKRM 128
               R+K     +     +  E + +  E  +KK Q   +     AAA        +  EQKR+
Sbjct: 1157199 RKKAAAQASAAAAEQAAEQKRLDEEAEKKKAQQEAEEAEKKAAAAAAAAAAEQVAEQKRL 1157378

Query: 129     QKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
                +  +  A  A   Q+   K+LD++ +  +A Q   +  K++
Sbjct: 1157379 AEEAEKKAAAAAAEQAAEQKRLDEEAEKKKAQQEAEEAQKKA 1157504



 Score = 28.1 bits (61), Expect = 4.6
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = -3

Query: 79     YDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALK 138
              YD+T +   E+ E             ++ H     EHEE   E+EEQ+  +   +H   +
Sbjct: 441523 YDETNHDEEEEEE-------------EEEHGEEEEEHEEHEEEEEEQEVYEGEEEHGEEE 441383

Query: 139    AGKTQSKTSKKLDQK 153
                + + +  + +D K
Sbjct: 441382 EEEHEEEEEEVVDSK 441338


>gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold7,
              whole genome shotgun sequence
          Length = 428971

 Score = 35.8 bits (81), Expect = 0.022
 Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
 Frame = +3

Query: 83     ENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKT 142
              EN+T EQVE+    ++   +  Q   +   ++ E+  +EQ++ ++ ++   H   +  + 
Sbjct: 302616 ENLTIEQVESSPPPVQETTQSSQVDVEQVQQQQEQHQQEQQQHEQNEQTEIHTESQVQQQ 302795

Query: 143    QSKTSKKLDQKPDPNQATQSHIKRN-KESKPLRSSDFSPLGGGPSNSA 189
              Q ++ K ++Q   P Q  Q+ I  +  +S  + S++ S L     ++A
Sbjct: 302796 QQESEKNVEQ---PEQQQQNEIDNSIIDSMTVTSANSSQLDNSDVSNA 302930


>gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold8,
               whole genome shotgun sequence
          Length = 2270872

 Score = 34.3 bits (77), Expect = 0.064
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
 Frame = +3

Query: 88      EQVEARSVAMERARKKLQDRHDAAAR----EHEERLREQEEQKRMQKINDHDALKAGKTQ 143
               +Q+E   +  ER +++L++  +        E EER RE+EEQ  +Q+  + + L   + +
Sbjct: 2034798 QQLENERLEREREKQELENERERERERRQSEREEREREREEQ--LQRERESERL---ERE 2034962

Query: 144     SKTSKKLDQKPDPNQATQSHIKRNKESKPLR 174
                K  ++  Q+ D     Q  I++ KE +  R
Sbjct: 2034963 RKEQERKQQEIDEYNRLQDEIRQRKEERQKR 2035055



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
 Frame = +3

Query: 98      ERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKK-------- 149
               ++ +++ Q +     +EH+E+ +EQE+Q++ Q+  ++D  K  + +S   K+        
Sbjct: 1179744 QQQQQQQQQQQQEQEKEHQEKEKEQEQQEQKQEQQNND--KTTEEESTIIKRNINQPNTL 1179917

Query: 150     LDQKP-----DPNQATQSHIKRNKES 170
               +DQ P     + + +T + IK N  +
Sbjct: 1179918 VDQLPPAPTSNSSSSTTASIKNNSNN 1179995



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 143    QSKTSKKLDQKPDPNQATQSHIKRNKESKP 172
              Q K  + L QK  PN +  + +K++ +SKP
Sbjct: 169695 QQKQQQTLQQKQQPNVSNSTQVKQSNKSKP 169784



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 21/96 (21%), Positives = 43/96 (44%)
 Frame = -2

Query: 104    LQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSH 163
              L+ R+    +  +++ ++Q++Q++ QK        +    S   +KL  +    Q  Q H
Sbjct: 482454 LEQRNRIKKKAKQQQQQQQQQQQQQQKRKSTTTTISSTPTSTLDEKLLLQQKQQQQHQQH 482275

Query: 164    IKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPS 199
               ++ +  +  R    SPL GG +   R  P +  P+
Sbjct: 482274 QQQLQLQQLRRQLSNSPLFGGVN---RQPPNDKHPT 482176


>gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1,
              whole genome shotgun sequence
          Length = 1995969

 Score = 34.3 bits (77), Expect = 0.064
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
 Frame = +1

Query: 75     RKTYYDDTENMTPEQV-EARSVAMERARKKLQDRHDAAAREHEERLRE-------QEEQK 126
              RK + ++      EQ  E   + +ERA+KKL++  +A  RE  ER+R+       +E++K
Sbjct: 703726 RKEHMNEEIKKRVEQANETERIRLERAKKKLEEL-EANEREERERVRQLELAREREEKEK 703902

Query: 127    RMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHI 164
                +K  + +  +  + +S+  ++  +  D     Q H+
Sbjct: 703903 EREKERERERERERERESRDRERDREDRDRFNKHQQHV 704016



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 13/74 (17%), Positives = 34/74 (45%)
 Frame = +2

Query: 90     VEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKK 149
              VE   +  E  + K   +  + ++   +  ++QEE + +++  +  + K GK  + ++  
Sbjct: 602963 VEDEEMEQEEVQTKPASKSSSRSKSSSKSKKQQEEVEEVEQEEEEKSTKKGKRSTTSAPI 603142

Query: 150    LDQKPDPNQATQSH 163
               ++KP      + H
Sbjct: 603143 EEEKPKKKSRAKYH 603184


>gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold10,
              whole genome shotgun sequence
          Length = 1641145

 Score = 33.9 bits (76), Expect = 0.084
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
 Frame = -3

Query: 76     KTYYDDTENMTPEQVEARSVA--------MERARKKLQDRHDAAAREHEERL-------R 120
              K  Y   EN    + E R +         +ER RK  +DR     +  EERL       R
Sbjct: 211013 KAIYQKKENKPKSEQERRELEAKLQEEQRVERERKAEEDRIAREKKAEEERLAEQARLER 210834

Query: 121    EQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDF 178
              E+EE+K+ +++     LK    Q +   +L Q    N A  +  +   E    R S F
Sbjct: 210833 EEEERKKQEQLAHERFLK----QKEELLQLQQLRQQNSAVTAKSRVVTEESSNRDSSF 210672


>gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9,
              whole genome shotgun sequence
          Length = 2264991

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 26/111 (23%), Positives = 54/111 (48%)
 Frame = -3

Query: 82     TENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGK 141
              T+N TP+  E           K QD  D   +E  E+ +E+E++K  ++  + +  +  K
Sbjct: 951583 TQNSTPKSTE-----------KKQD--DKKHKEEREKEKEREKEKEKEREREKEKERERK 951443

Query: 142    TQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWR 192
               + +  K+ +++ +  +++ S  + +KE    R+S  S      S+SA+ R
Sbjct: 951442 RRREKEKEKEREREKEKSSSSKSRDSKEGGESRTSKSS--SSSSSSSAKDR 951296



 Score = 32.0 bits (71), Expect = 0.32
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
 Frame = +1

Query: 80      DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQK-------IN 132
               D   +  P++ +     M    KK++D  +  A+  +E  R  EEQK++++        N
Sbjct: 1862602 DKMAHSVPKKDKKAKDEMAVKTKKMED--ELLAKHKQEMSRFDEEQKKVEQGINDLLISN 1862775

Query: 133     DHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFS 179
               + ++    KTQ K  KKL+++    +  +   K +     +  +DF+
Sbjct: 1862776 NSESKGPSKTQLKKQKKLEEEEARAKQLEEDRKNHISKGSIEFADFA 1862916



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
 Frame = -3

Query: 81      DTENMTPEQVEARSVAM---ERARKKLQDRHDAAAREH---EERLREQEEQKRMQKINDH 134
               D  N T ++ +A  V     E          D A  E    E + ++++  K  +K   +
Sbjct: 1540627 DKNNSTDKEKKALEVEFPFPEEYNDPNYQSDDEAEEEEVKPETKKKQKKSSKSTKKSTPN 1540448

Query: 135     DALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
                  K   T SKT  K   K  P +  +S  KRN  S
Sbjct: 1540447 TKKKQTSTTSKTLTKSSSKSTPVKEEKSKAKRNSTS 1540340



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 73      GRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQE--EQKRMQK 130
               G R+     TEN T EQ +   + + R R++    HD        +L+ +    QK  ++
Sbjct: 2088075 GDRERLTTQTENGTTEQSQPEGLGVCRDREEDLSSHDQTTENDRSQLQTENSINQKSTKE 2088254

Query: 131     INDH 134
                N+H
Sbjct: 2088255 YNNH 2088266



 Score = 27.3 bits (59), Expect = 7.9
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
 Frame = +1

Query: 80     DDTENMTPEQVEARSVAMERARKKLQDRHDAAARE----HEERLREQEEQKRMQKINDHD 135
              +D E  + + VE       +  K  +D  D  + +    H E     ++    +K   + 
Sbjct: 485926 NDKEVKSKKVVEDTKTKKNKVVKNDEDESDKMSVDDESTHSESSDTDKKSSSRKKEKKNK 486105

Query: 136    ALKAGKTQSKTSKK--------LDQKPDPNQATQSHIKRNKESKPLRSSD 177
                K  K  SK SKK         +++    Q  +   K+NKE K  ++SD
Sbjct: 486106 DKKKEKKSSKKSKKEESSEEEEEEEEKQDKQEKKKKSKKNKEKKSKKTSD 486255


>gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig9,
              whole genome shotgun sequence
          Length = 1029409

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
 Frame = -1

Query: 83     ENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKT 142
              +     ++ + S      +++  + H       +E++       +    +   + K+  +
Sbjct: 594451 QQQNSHELNSNSNTNNNEQEQNNNHHQQQQHNSQEKIASPSSSSKTSSTSTSSSSKSNNS 594272

Query: 143    QS-----KTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNS 196
               S      T+K   Q P PN      + R++   P  S+ +SP     S + R+ P N+
Sbjct: 594271 NSVSSTATTNKVEHQSPTPNSYQSPTVGRHQSLSPGPSNQYSPSPSSSSTNKRYSPYNN 594095


>gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2,
               whole genome shotgun sequence
          Length = 3242543

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = -3

Query: 81      DTENMTPEQVEARSVAMERARKKLQDRHDAAAREH---EERLREQEEQKRMQKINDHDAL 137
               + E    +Q+E    + + ++K  +  H +A  E    ++     +++K     N+    
Sbjct: 2955204 EKEKQKKKQMELEKESAKLSKKSKKQSHHSADDEDNGTKDDSSTSDDEKSTTAANNKQTA 2955025

Query: 138     KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
               K  K+ S  SKK ++  D  +    + K+NK+S
Sbjct: 2955024 KKKKSSSSKSKKQEKSDDDEEMADVNDKKNKKS 2954926



 Score = 28.1 bits (61), Expect = 4.6
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +3

Query: 87      PEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRM---QKINDHDALKAGKTQ 143
               PE ++  S  + R +     R DA+   H    R  EE+KR+    K+N          +
Sbjct: 2369937 PEALDRHSHPLPRCQPSTYHRVDAS---HRTLGRRNEERKRV*EEIKVN---------IE 2370080

Query: 144     SKTSKKLDQKPDPNQATQSHIKRNK 168
                 T+ K  Q       TQ H+KR+K
Sbjct: 2370081 PTTTTKTKQTTT*QHETQQHVKRSK 2370155



 Score = 27.7 bits (60), Expect = 6.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = -1

Query: 120     REQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFS 179
               +E+E++KRM      +  K  K + +  +K  +K +  ++ +   + NKE+K  +     
Sbjct: 2316062 KEKEKEKRMLIKKKKEKDKREKMRLEEERKAKEKKELKKSKEKSSQLNKENKKKKGGLNG 2315883

Query: 180     PLGGGPSNSA 189
                  G P+N +
Sbjct: 2315882 STVGTPTNGS 2315853


>gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15,
              whole genome shotgun sequence
          Length = 727357

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 98     ERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHD 135
              +R R++ +DRHD      +ER RE+E ++   + + HD
Sbjct: 422291 DRERERDRDRHDREREREKERERERERERERHERDRHD 422404



 Score = 29.3 bits (64), Expect = 2.1
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 93     RSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQ 152
              R    ER R++ ++RH+    + E R  ++E  +  +    HD      T +  ++K  +
Sbjct: 422339 REKERERERERERERHERDRHDKESRHHDKERDRHDKDGRHHDKYDKYSTSAPITEKKSK 422518

Query: 153    KPDPNQATQSHIK 165
              K  P+ A Q  +K
Sbjct: 422519 K-YPSIADQYELK 422554



 Score = 27.3 bits (59), Expect = 7.9
 Identities = 21/93 (22%), Positives = 41/93 (44%)
 Frame = -3

Query: 80     DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKA 139
              DD ++   ++VE +    +   +   D  +  + E EE    +EE+K + K        A
Sbjct: 316550 DDDDDDHKDKVEIKDEPEDSEEE--DDDIEEESEESEEESESEEEEKVVVKKQP-----A 316392

Query: 140    GKTQSKTSKKLDQKPDPNQATQSHIKRNKESKP 172
                 Q+  +KKL+   + N    +    NK+++P
Sbjct: 316391 PVQQNNNNKKLNNNNNNNNNNNNSKNNNKQTQP 316293


>gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1,
              whole genome shotgun sequence
          Length = 1301413

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
 Frame = -3

Query: 65     EKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
              E  +K L  ++K      E    ++ EAR    ERA K  + + D  A E  E+ + QE+
Sbjct: 861221 ELRMKKLEEQKKMEEKQRERQKKKEDEARKREEERA-KAAEKQLDPKAHEKSEKKKRQEQ 861045

Query: 125    -------QKRMQKIN-DHDALKAGKTQSKTSKKLDQKPDPNQATQ 161
                     +K+ Q+++ +  AL+  K Q+   K L   PD     Q
Sbjct: 861044 ANREAELKKQQQRLDRNKKALEQSKQQTTAVKALVILPDAQHQAQ 860910



 Score = 29.6 bits (65), Expect = 1.6
 Identities = 22/92 (23%), Positives = 43/92 (46%)
 Frame = +2

Query: 80     DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKA 139
              DD EN         +  ++++ +K   R D   +E E+R +E+EEQ+  +  N     + 
Sbjct: 913571 DDKENKHSNIDNKNNKKVKKSLRK--QRKD---KEKEKRHKEEEEQEEEEDDNQQGNEEE 913735

Query: 140    GKTQSKTSKKLDQKPDPNQATQSHIKRNKESK 171
               ++ +K SKK  +  D + +       +KE +
Sbjct: 913736 KESVTKLSKKKSKSADKDSSDDEDQDEDKEEE 913831



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
 Frame = -2

Query: 88      EQVEARSVAMERARKKL---QDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQS 144
               E+  A+    E   ++L   QD+     +E  E+++EQEEQ  M+  +D D  ++     
Sbjct: 1210080 EETAAQEAGEEEELEELELNQDKWKGKTKEDIEKIKEQEEQDDMKDGDDDDDDESEDEVD 1209901

Query: 145     KTSKKLD--QKPDPNQATQSHIKRNKES-----KPLRSSDFSPLGGGPSNSAR 190
               +  ++ +  + PD  Q  ++   R + S     K  RSS +  +   P + AR
Sbjct: 1209900 EKDREQNEFEFPDEVQTPENFPCRVRYSKYRGLKSFRSSPWDAMENLPIDYAR 1209742



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
 Frame = +2

Query: 79    YDDTENMTPEQVEARS------VAMERARKK--------LQDRHDAAAREHEERLREQEE 124
             Y+  +++ PE  +  +      + ++++ KK         ++ +++  ++   +L  Q  
Sbjct: 79877 YEKAKSLDPENADIHNNLKQAKIDLKKSLKKDYYKILGVSKEANESEIKKAYRKLALQYH 80056

Query: 125   QKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGG 184
               +   + + D LKA +      +      DP +  +  + +++   P  S  FS  GGG
Sbjct: 80057 PDKNSTLPEEDKLKAERLFKDVGEAYSVLSDPKKKQRYDLGQDENGMPFDSEGFSGFGGG 80236


>gb|GL291002.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig5,
            whole genome shotgun sequence
          Length = 28166

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +2

Query: 88   EQVEARSVAMERARKKL---QDRHDAAAREHEERLREQEEQ-KRMQKINDHDALKAGKTQ 143
            EQ+   +  + R R+ L   +D H     E+EE++ + EEQ K +Q ++  +   A  T 
Sbjct: 5504 EQLNKSTKELSRLRQHLLEMEDNHTTTDLENEEKIAQLEEQLKTLQDVSSSNR-TASDTN 5680

Query: 144  SKTSKKLDQKPDPNQAT 160
             + +++L +K D  + T
Sbjct: 5681 DRLTRELHEKDDELKRT 5731


>gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig13,
             whole genome shotgun sequence
          Length = 836226

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = -2

Query: 98    ERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPN 157
             ++ ++K + +H    REH+++ REQ ++ R  K +  +   +  + S TS        P 
Sbjct: 87470 DKEKEKKKKKH----REHKDKEREQRKKDREHKKSSKEK-SSSSSSSSTSSSDSTSLTPE 87306

Query: 158   QATQSHIKRNKESKPLR 174
             Q  ++   R KE +  R
Sbjct: 87305 QEKEARALRKKEKEERR 87255


>gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig6,
             whole genome shotgun sequence
          Length = 254162

 Score = 30.4 bits (67), Expect = 0.93
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -2

Query: 83    ENMTPEQVEARSVAM-ERARKKLQDRHDAAAREHEERLREQ-EEQKRMQKINDHDALKAG 140
             +NMT +Q E   +   E+ RK+ +DR + A R+ EER +++  E ++ QK  +    +  
Sbjct: 20356 KNMTLQQKEKERIEQAEQLRKEKEDREEEARRD-EERRKQEIAEVQKKQKEKEEAEAEET 20180

Query: 141   KTQSKTSKK 149
             K Q + S++
Sbjct: 20179 KKQIEASRQ 20153



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 96     AMERARKKLQDRHDAAAREHEERLREQEEQKR 127
              A ERA ++  +R      E EER+++ EE+K+
Sbjct: 204346 AAERAERERLEREQREKEEEEERIKKAEEKKK 204441


>gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13,
              whole genome shotgun sequence
          Length = 1052162

 Score = 30.4 bits (67), Expect = 0.93
 Identities = 21/90 (23%), Positives = 42/90 (46%)
 Frame = -1

Query: 88     EQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTS 147
              +Q+E    A  + +K +  +    A+E EER R+Q+ QK  +     +  +  +   +T 
Sbjct: 379049 KQIEKELTAKPKKQKGMASKKGQKAKEREER-RQQQLQKEREAKEKKEEKEKKRLAKQTE 378873

Query: 148    KKLDQKPDPNQATQSHIKRNKESKPLRSSD 177
              ++L +K   +  T+  ++   E   L  SD
Sbjct: 378872 RELKKKEAADNGTE--LEDEDELDDLSESD 378789



 Score = 28.1 bits (61), Expect = 4.6
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 156    PNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPS 199
              PN+    +  RN+ ++  RSS FS    GPSN +R   G+ RPS
Sbjct: 173981 PNRCVLGY--RNRRNRCWRSSCFSTRTHGPSNPSR---GSRRPS 173865


>gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3,
              whole genome shotgun sequence
          Length = 2290287

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
 Frame = -1

Query: 83     ENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKI-----NDHDAL 137
              EN   ++V+ +    ++ RKK   R     ++ ++R R+++ Q+  Q+      N H   
Sbjct: 602901 ENKKKKKVKMKRRKRKKKRKKRIKRKKKKKKKKKKRKRKKKNQRNQQRNQQHRKNQHHHQ 602722

Query: 138    KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
              +      K  KK + K    Q  Q   +RNK++
Sbjct: 602721 RKPLHLKKKQKKHNPKRKQKQQQQQLNQRNKKA 602623



 Score = 29.6 bits (65), Expect = 1.6
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
 Frame = -3

Query: 80    DDTENMTPEQ--VEARSVAMERARKKLQDRHDAAA------REHEERLREQEEQKRMQKI 131
             D+TE  T ++   E +    E+ ++K +   + A       ++ +E + EQ+E++   K 
Sbjct: 96307 DETEKTTKKKKVTEKKDGKKEKEQEKKEKEKEKATSSKKKKKDEDEEMEEQDEEEEKPKP 96128

Query: 132   NDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSP 180
                   K   ++SK S+K   + D ++  Q   +  K  +  + +  SP
Sbjct: 96127 KTTTKKKVAASRSKKSEK---EADDDEDFQDEKESEKPKETKKKTTTSP 95990



 Score = 29.3 bits (64), Expect = 2.1
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 10      GDPNTAGSAGNQGPL-INENPYVMMSVFNQG 39
               G P++ G+ G QGPL I+++P+ + +   QG
Sbjct: 1937162 GSPSSGGTTGKQGPLEISQDPWSLFTPVTQG 1937070



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 20/103 (19%), Positives = 45/103 (43%)
 Frame = +3

Query: 88     EQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTS 147
              E VEA +     ++K+ + +   + ++H+E+ R+++  +  ++ ++H          K S
Sbjct: 466887 EWVEAPTTTDHSSQKEKKHKEKNSKKKHKEKNRDRDRDRERERGDNH---------KKRS 467039

Query: 148    KKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSAR 190
              K+     D +    S  K   ++   + SD +   GG     R
Sbjct: 467040 KQHKNDDDDDVVDDSKKKLKIDNNDSKDSDNATGVGGSGGGGR 467168


>gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig8,
              whole genome shotgun sequence
          Length = 1319729

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 23/109 (21%), Positives = 45/109 (41%)
 Frame = +3

Query: 81     DTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAG 140
              D    T E+ E +S + + +     D  D++     E   E E++K     ++ +  K  
Sbjct: 401100 DDSTTTTEKSEQKSYSSDSSDSSSSDSSDSSDSSSSES--EDEKKKSDSSSSESEDEKKK 401273

Query: 141    KTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSA 189
                 S +S+  D+K   +  + S    +++ K   SSD S      S+ +
Sbjct: 401274 SDSSSSSESEDEKKKKDSDSSSSESEDEKKKSDSSSDSSSSDSSSSSDS 401420



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 76    KTYYDDTENMTPEQVEARSVAMERARKKLQDRH--DAAAREHEERLREQEEQKRMQKIND 133
             KT     E M P++        +  ++K Q R+  + A +E EE+L+++E+  + Q   +
Sbjct: 39199 KTNQPKKEQMIPDR--------QSPQQKQQQRYPFEEACKELEEQLKQKEKMYQKQIEQN 39354

Query: 134   HDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
               ALK  + + +  KKL ++    +   +  K+  ES
Sbjct: 39355 IQALKKVEDKEEKIKKLKKEKSEVKKELNCSKQKLES 39465


>gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold14,
              whole genome shotgun sequence
          Length = 1054919

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
 Frame = +2

Query: 79     YDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQ-----KIND 133
              Y+D  + + ++ ++R    ++ + + + R     +  EERL   E+ KR++     +I  
Sbjct: 704519 YEDQNHYSIKKGKSRKQERQKKKDEKKKRRQHYHQVREERLMNPEKLKRIKQEKEDRIKQ 704698

Query: 134    HDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLR 174
                A K  + + +  K+  ++   NQ  Q+ I +  +++  R
Sbjct: 704699 ERADKQREKELREEKRNRREEKRNQQNQASIAKLSDAEKKR 704821


>gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold12,
              whole genome shotgun sequence
          Length = 1032189

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 21/93 (22%), Positives = 41/93 (44%)
 Frame = -2

Query: 88     EQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTS 147
              E+ + +   +E+ + K + +  +   E EE   E+EEQ+  ++          +   KT 
Sbjct: 337760 EEKKEKEKEIEKEKAKQKAKSKSKKEEKEEEEEEEEEQQDEEE---------DEEPKKTL 337608

Query: 148    KKLDQKPDPNQATQSHIKRNKESKPLRSSDFSP 180
              KK  QK      + S ++   + K  +S+  SP
Sbjct: 337607 KK--QKTSATSKSNSKVESESKDKKTKSTKKSP 337515



 Score = 27.3 bits (59), Expect = 7.9
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +3

Query: 88     EQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQ-KINDHDALKAGKTQSKT 146
              +Q +++   ++    +L   + +  ++ +++ ++Q++Q   Q   +D++   AGKT  K 
Sbjct: 722046 QQQQSQQQQLQLPPPRLTSSYFSQQQQQQQQQQQQQQQSSSQGSQSDNNNNNAGKTFKKN 722225

Query: 147    SKKLDQKPDPNQATQSHIKRNKES 170
              S   DQ+   N   Q   K+ KES
Sbjct: 722226 SLVTDQRVSLNIFDQFMYKK-KES 722294


>gb|GL291024.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig27,
             whole genome shotgun sequence
          Length = 200704

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 13/86 (15%), Positives = 42/86 (48%)
 Frame = -3

Query: 87    PEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKT 146
             P+QV ++    ++ +++   ++   A +  ++  + ++Q+  Q +N          ++  
Sbjct: 26162 PQQVYSQQPFQQQQQQRPPQQYQPQAPQQYQQPYQAQQQQYQQPLNQQQQQPPQNWRAPP 25983

Query: 147   SKKLDQKPDPNQATQSHIKRNKESKP 172
              + + Q+P P+Q  +    + +E++P
Sbjct: 25982 QQGMYQQPPPSQYDRRRQDQYQETRP 25905


>gb|GL291008.1| Polysphondylium pallidum PN500 unplaced genomic scaffold
            PPL_contig11, whole genome shotgun sequence
          Length = 13030

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = -3

Query: 80   DDTENMTPEQVEARSVAMERARKKLQDR----HDAAAREHEERLREQEEQKRMQKINDHD 135
            DD+ NM  + + +R  +  R+   ++DR    H+    EH     E E +   +K + HD
Sbjct: 4817 DDSGNMLDDPL-SRGNSPVRSGGSIRDRRGSKHEEEEEEHHSTDDEHEHKYSDEKDDHHD 4641

Query: 136  ALKAGKTQSKTSKKLDQKPDPNQATQSH 163
                   Q   +  LD+  +   AT +H
Sbjct: 4640 HEDDHHDQKTPTDDLDKNLEHANATPTH 4557


>gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6,
              whole genome shotgun sequence
          Length = 2018088

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +2

Query: 131    INDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSAR 190
              IN  D  K  + + K   + +++ +  +A Q   K     +    SD S  GGG SNS  
Sbjct: 721544 INPVDEFKLKQKKEKERLEREKEKNKKKAQQQQNKNRSIIRSSGDSDTSSGGGGGSNSGS 721723

Query: 191    WRPGNSRPSA 200
                   + PS+
Sbjct: 721724 IPSSPAAPSS 721753


>gb|GL291017.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig20,
             whole genome shotgun sequence
          Length = 464707

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 21/122 (17%), Positives = 44/122 (36%)
 Frame = -2

Query: 81    DTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAG 140
             D+ + + E    R    +R R        A      +R R+++  +   +  D D  +  
Sbjct: 59778 DSRDNSRENSRGRDRDRDRDRSSQSSSSRAERDRDRDRDRDRDRDRDRDRDRDRDRDRDR 59599

Query: 141   KTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPSA 200
                    +  ++  D N++     +R+ +      S  +  GGG S     +  +S   +
Sbjct: 59598 DRDRDRDRDRNRDRDRNRSDSRDRRRSSDQTATTRSTTTSTGGGGSRDKDRKASSSGGGS 59419

Query: 201   GG 202
             GG
Sbjct: 59418 GG 59413


>gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11,
              whole genome shotgun sequence
          Length = 1505626

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 19/88 (21%), Positives = 39/88 (44%)
 Frame = -2

Query: 114    EHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPL 173
              EH+++ +  ++ K     N H      K + K S K ++K    +  +S  K +K+ K  
Sbjct: 234111 EHKDKKKNDKDNKDNNTDNKHKDKSTDKEKDKDSNKDNEKEKEKEKEKSKDKESKD-KNN 233935

Query: 174    RSSDFSPLGGGPSNSARWRPGNSRPSAG 201
               ++  +      S+S+    GN++   G
Sbjct: 233934 NTTTTTTTTTTTSSSSSTTNGNTKKENG 233851


>gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4,
              whole genome shotgun sequence
          Length = 1229170

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -3

Query: 93     RSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTS 147
              RS     +  +LQD H +   E++  + +Q++QKR    +  +      + + T+
Sbjct: 161024 RSYYFTTSTSRLQDNHSSNNNEYQSLVFDQQQQKRSSSTSSSNTSPPSSSSTPTT 160860


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,451,759
Number of Sequences: 42
Number of extensions: 59530
Number of successful extensions: 415
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 335
length of query: 204
length of database: 10,980,844
effective HSP length: 95
effective length of query: 109
effective length of database: 10,976,854
effective search space: 1196477086
effective search space used: 1196477086
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)